Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3199

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11566 and 11567 are separated by 256 nucleotides11567 and 11568 are separated by 637 nucleotides mRNA_3198: 11566 - K20176 SGSM3, MAP small G protein signaling modulator 3, at 66,778 to 71,121 11566 mRNA_3199: 11567 - K12881 THOC4, ALY THO complex subunit 4, at 71,378 to 73,355 11567 mRNA_3200: 11568 - KOG1515 Arylacetamide deacetylase, at 73,993 to 76,977 11568

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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70,525 + 11566 mRNA_3198 0.86 -0.2
70,914 - +1.5
71,017 + +1.6
71,225 - +1.2
71,238 + +0.8
71,439 - -0.2
73,619 + +1.3
73,622 - -0.9
73,623 + -0.0
73,624 + +0.3
73,625 - -1.3
73,641 + -0.8
73,645 + -0.1
73,645 - -0.4
73,646 + +0.1
73,649 - +0.5
73,660 + -1.4
73,667 + +0.5
73,669 - +0.8
73,780 - +0.2
73,783 - +0.8
73,788 + -1.3
73,808 - +1.1
73,813 - +0.0
73,825 + -0.0
73,845 + -0.0
73,950 + -0.1
73,950 + +0.7
73,969 + +0.5
73,974 - +1.4

Or see this region's nucleotide sequence