Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3229

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11596 and 11597 are separated by 229 nucleotides11597 and 11598 are separated by 940 nucleotides mRNA_3228: 11596 - Hypothetical Protein, at 150,554 to 152,280 11596 mRNA_3229: 11597 - K01113 phoD alkaline phosphatase D, at 152,510 to 154,539 11597 mRNA_3230: 11598 - HMMPfam-Region of unknown function (DUF2417)-PF10329, at 155,480 to 157,759 11598

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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151,523 + 11596 mRNA_3228 0.56 +0.3
151,598 + 11596 mRNA_3228 0.60 -0.6
151,667 + 11596 mRNA_3228 0.64 -0.4
151,694 - 11596 mRNA_3228 0.66 -0.1
151,708 - 11596 mRNA_3228 0.67 -0.6
151,708 - 11596 mRNA_3228 0.67 +1.5
151,708 - 11596 mRNA_3228 0.67 +1.0
151,708 + 11596 mRNA_3228 0.67 +0.4
151,709 + 11596 mRNA_3228 0.67 +1.5
151,709 - 11596 mRNA_3228 0.67 -1.2
151,709 - 11596 mRNA_3228 0.67 +0.3
151,713 + 11596 mRNA_3228 0.67 +1.3
151,765 + 11596 mRNA_3228 0.70 +1.1
151,849 + 11596 mRNA_3228 0.75 +0.6
152,208 + +1.9
152,295 - +0.6
152,299 - -0.6
152,321 - -0.7
152,344 + +0.4
152,557 + +0.5
152,591 + +0.2
152,600 + +0.7
152,679 - +0.4
152,720 - 11597 mRNA_3229 0.10 +0.7
152,993 - 11597 mRNA_3229 0.24 +0.1
153,047 - 11597 mRNA_3229 0.26 +0.4
153,166 - 11597 mRNA_3229 0.32 +0.3
153,179 + 11597 mRNA_3229 0.33 +0.1
153,385 + 11597 mRNA_3229 0.43 +0.3
153,593 + 11597 mRNA_3229 0.53 -0.9
153,881 - 11597 mRNA_3229 0.68 +1.3
153,912 + 11597 mRNA_3229 0.69 +0.3
154,487 - -0.6
154,897 - -0.4
154,921 - +0.2
154,927 - +2.2
155,030 - -0.7
155,044 - -0.0
155,076 + +1.7
155,192 - +0.6
155,211 + -0.6
155,214 + +0.9
155,336 - +0.3
155,344 - -0.1
155,348 - -0.1
155,350 - +0.3
155,350 + +0.4
155,352 - +0.3
155,356 + +0.8
155,363 - +0.9
155,368 - +1.5
155,370 - +0.4
155,371 - -0.6
155,373 + +1.2
155,375 - +1.6
155,376 + +0.1
155,378 + +2.4
155,378 + +0.6
155,383 + +0.2
155,419 - +1.1

Or see this region's nucleotide sequence