Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3234

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11601 and 11602 are separated by 181 nucleotides mRNA_3233: 11601 - KOG1339 Aspartyl protease, at 161,469 to 163,797 11601 mRNA_3234: 11602 - Hypothetical Protein, at 163,979 to 166,240 11602

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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163,328 - 11601 mRNA_3233 0.80 -0.6
163,399 + 11601 mRNA_3233 0.83 +0.2
163,460 - 11601 mRNA_3233 0.85 +1.2
163,620 - -0.0
163,638 - +0.5
163,643 + +0.6
163,757 + -0.4
163,950 - +1.7
163,952 + +0.1
164,090 - -0.2
164,207 - 11602 mRNA_3234 0.10 +0.3
164,330 - 11602 mRNA_3234 0.16 +1.1
164,520 + 11602 mRNA_3234 0.24 +0.6
164,875 - 11602 mRNA_3234 0.40 +0.4
165,135 + 11602 mRNA_3234 0.51 -0.3
165,229 + 11602 mRNA_3234 0.55 +2.0
165,758 - 11602 mRNA_3234 0.79 -0.3
166,174 + +0.4
166,589 - +0.4
166,694 + -1.0
166,701 - -0.1
166,752 - +0.8
166,897 - +1.0
166,994 - +0.8
167,137 + -0.1

Or see this region's nucleotide sequence