Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3245

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11612 and 11613 are separated by 459 nucleotides mRNA_3244: 11612 - Hypothetical Protein, at 199,306 to 200,606 11612 mRNA_3245: 11613 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702, at 201,066 to 204,037 11613

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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200,108 + 11612 mRNA_3244 0.62 -0.0
200,206 + 11612 mRNA_3244 0.69 +2.0
200,479 + -0.3
200,500 - -0.2
200,515 - -0.9
200,553 - +0.4
200,597 + -0.6
201,006 - +0.2
201,130 - -0.3
202,039 + 11613 mRNA_3245 0.33 +0.8
202,325 + 11613 mRNA_3245 0.42 +1.7
202,630 + 11613 mRNA_3245 0.53 -1.3
202,767 - 11613 mRNA_3245 0.57 -0.5
203,376 - 11613 mRNA_3245 0.78 -0.0
203,509 + 11613 mRNA_3245 0.82 +0.7
203,657 - 11613 mRNA_3245 0.87 +0.1
203,661 + 11613 mRNA_3245 0.87 -0.1
203,790 - -0.1
203,799 - -0.1
203,946 + -1.2
203,947 + -0.7
204,103 - -0.1
204,225 - -0.7
204,225 - -0.8
204,225 - -0.4
204,234 - +0.4
204,235 - +0.7
204,238 + -0.2
204,250 - +1.3
204,251 + +0.7
204,270 + +0.3
204,278 + +0.7
204,280 + -0.1
204,286 - -0.5
204,290 - -0.7
204,291 - +0.1
204,298 + +0.3
204,314 + +1.2
204,335 - -0.8
204,357 - -1.0
204,383 - +0.2
204,393 - -0.5
204,412 + -0.4
204,437 - -0.4
204,443 - +1.0
204,445 + -0.5
204,447 - -0.0
204,448 + +1.1
204,448 - +0.5
204,454 + -0.2
204,454 + +0.4
204,455 - +0.3
204,463 + -0.3
204,468 - +0.2
204,473 + +2.9
204,479 + +2.7
204,484 - +1.2
204,491 - +0.1
204,511 - +0.4
204,528 - +0.4
204,534 - +0.5
204,547 - +0.3
204,557 + -0.2
204,639 + +1.1
204,647 + -0.7
204,652 - -0.3
204,654 + -0.3
204,664 - -0.1
204,665 + +0.6
204,678 + +1.3
204,695 + -1.8
204,699 + +0.6
204,724 - -0.3
204,727 + +0.2
204,801 - +0.2
204,811 + +1.0
204,826 + +1.4
204,957 - +2.5

Or see this region's nucleotide sequence