Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3246

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11614 and 11615 are separated by 397 nucleotides mRNA_3246: 11614 - Hypothetical Protein, at 205,429 to 207,188 11614 mRNA_3247: 11615 - Hypothetical Protein, at 207,586 to 209,247 11615

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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204,437 - -0.4
204,443 - +1.0
204,445 + -0.5
204,447 - -0.0
204,448 + +1.1
204,448 - +0.5
204,454 + -0.2
204,454 + +0.4
204,455 - +0.3
204,463 + -0.3
204,468 - +0.2
204,473 + +2.9
204,479 + +2.7
204,484 - +1.2
204,491 - +0.1
204,511 - +0.4
204,528 - +0.4
204,534 - +0.5
204,547 - +0.3
204,557 + -0.2
204,639 + +1.1
204,647 + -0.7
204,652 - -0.3
204,654 + -0.3
204,664 - -0.1
204,665 + +0.6
204,678 + +1.3
204,695 + -1.8
204,699 + +0.6
204,724 - -0.3
204,727 + +0.2
204,801 - +0.2
204,811 + +1.0
204,826 + +1.4
204,957 - +2.5
205,112 + +0.3
205,123 + -1.4
205,258 + -0.8
205,351 + -0.8
205,379 - -0.4
205,534 + -0.2
205,548 - +0.3
205,821 + 11614 mRNA_3246 0.22 -0.2
205,842 - 11614 mRNA_3246 0.23 -0.7
205,853 + 11614 mRNA_3246 0.24 +0.1
206,075 + 11614 mRNA_3246 0.37 +0.0
206,250 - 11614 mRNA_3246 0.47 +0.6
206,282 + 11614 mRNA_3246 0.48 -1.3
206,716 - 11614 mRNA_3246 0.73 +0.9
206,970 - 11614 mRNA_3246 0.88 +0.4
206,989 + 11614 mRNA_3246 0.89 +0.7
207,159 - +1.3
207,285 - +0.1
207,317 + +1.6
207,327 - -0.4
207,356 + -0.4
207,427 - +1.4
207,605 - +1.2
207,618 - +2.3
207,634 + -0.6
207,730 + +0.0
207,734 + +0.0
207,865 - 11615 mRNA_3247 0.17 +0.5
207,926 - 11615 mRNA_3247 0.20 +0.1
207,984 + 11615 mRNA_3247 0.24 +0.0
208,012 + 11615 mRNA_3247 0.26 +0.4

Or see this region's nucleotide sequence