Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3268

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11635 and 11636 are separated by 205 nucleotides11636 and 11637 are separated by 428 nucleotides mRNA_3267: 11635 - K02357 tsf, TSFM elongation factor Ts, at 248,582 to 249,766 11635 mRNA_3268: 11636 - Hypothetical Protein, at 249,972 to 250,888 11636 mRNA_3269: 11637 - Hypothetical Protein, at 251,317 to 251,625 11637

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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249,680 + +0.1
249,862 - +1.0
249,974 + +0.3
250,427 + 11636 mRNA_3268 0.50 +0.4
251,168 - -0.8
251,417 + 11637 mRNA_3269 0.32 -0.4
251,532 - 11637 mRNA_3269 0.70 +0.5
251,798 - +0.5

Or see this region's nucleotide sequence