Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3272

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11639 and 11640 are separated by 311 nucleotides11640 and 11641 are separated by 229 nucleotides mRNA_3271: 11639 - K07126 K07126 uncharacterized protein, at 254,292 to 257,031 11639 mRNA_3272: 11640 - Hypothetical Protein, at 257,343 to 259,236 11640 mRNA_3273: 11641 - K13754 SLC24A6, NCKX6 solute carrier family 24 (sodium/potassium/calcium exchanger), member 6, at 259,466 to 262,865 11641

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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256,647 - 11639 mRNA_3271 0.86 +1.6
256,648 + 11639 mRNA_3271 0.86 +0.8
256,796 - +0.4
257,106 + +1.0
257,245 - +2.0
259,277 - +0.3
259,306 - +0.2
259,417 - +0.4
259,422 - -0.6
259,425 + -0.3
259,431 - -0.8
259,432 - -0.1
259,434 - +0.4
259,441 - +0.6
259,478 + -1.2
259,612 - +1.1
259,752 - -0.1
259,874 - 11641 mRNA_3273 0.12 -0.0
259,898 + 11641 mRNA_3273 0.13 +1.3
260,052 + 11641 mRNA_3273 0.17 +0.9

Or see this region's nucleotide sequence