Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3292

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11659 and 11660 are separated by 584 nucleotides mRNA_3291: 11659 - BLAST expressed protein [Schizophyllum commune H4-8], at 308,905 to 310,428 11659 mRNA_3292: 11660 - KOG1339 Aspartyl protease, at 311,013 to 311,790 11660

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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310,115 + 11659 mRNA_3291 0.79 +0.0
310,116 + 11659 mRNA_3291 0.79 +0.6
310,273 - 11659 mRNA_3291 0.90 -0.2
310,292 - +0.2
310,569 - +2.3
310,578 - -0.6
310,594 - -1.3
310,598 - -1.1
310,629 + +0.4
310,629 - +1.3
310,652 - -0.1
310,654 - +0.7
310,655 + -0.2
310,669 - -0.5
310,677 - +0.4
310,706 - -0.2
310,710 - -0.2
310,710 - +0.1
310,748 + +0.1
310,991 - +0.1
311,141 + 11660 mRNA_3292 0.16 -0.5
311,291 - 11660 mRNA_3292 0.36 +0.7
311,294 - 11660 mRNA_3292 0.36 -1.2
311,300 + 11660 mRNA_3292 0.37 +1.0
311,405 - 11660 mRNA_3292 0.50 -0.0
311,468 - 11660 mRNA_3292 0.58 +0.2
311,574 - 11660 mRNA_3292 0.72 -0.0
311,620 + 11660 mRNA_3292 0.78 +0.3
311,632 - 11660 mRNA_3292 0.80 +0.5
311,648 - 11660 mRNA_3292 0.82 +0.7
311,732 - +0.8
311,740 + +1.0
311,755 - +0.5
311,755 + +0.8
311,759 + -0.0
311,764 - +0.6
311,764 - +0.3
311,765 + +1.1
311,772 + -0.1
311,773 - -0.2
311,774 - +0.3
311,775 - +0.1
311,775 - +0.2
311,777 - +0.0
311,777 + +0.3
311,778 + -0.3
311,781 - +1.2
311,781 - -0.3
311,783 + +0.2
311,894 - -0.6
311,956 + +0.2
312,247 + +0.4
312,259 + -0.1
312,304 - +1.2
312,306 - -0.2
312,308 + -0.2
312,308 + +0.2
312,314 - +0.2
312,314 - +0.4
312,316 - +0.7
312,319 - +0.1
312,321 + +0.4
312,341 + +2.5
312,341 + +1.7
312,345 + +0.3
312,351 + +0.0
312,353 - +0.5
312,354 - +0.3
312,355 - +0.2
312,361 + +0.9
312,381 + -0.0
312,393 - +0.1
312,408 - -2.0
312,428 + +0.8
312,456 - -0.2
312,460 - +0.9
312,474 - +0.7
312,482 - -0.9
312,485 - +0.8
312,490 - +0.8
312,493 - +1.1
312,716 + -0.2
312,716 + +0.7
312,753 + +1.7

Or see this region's nucleotide sequence