Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3293

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11661 and 11662 are separated by 13 nucleotides mRNA_3293: 11661 - K01440 PNC1 nicotinamidase, at 318,203 to 319,692 11661 mRNA_3294: 11662 - K20368 CNIH, ERV14 protein cornichon, at 319,706 to 321,575 11662

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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317,285 - +0.1
317,319 + +1.0
317,331 + +0.7
317,418 - +0.4
317,488 + +0.7
317,492 - +1.0
317,788 + +0.5
317,890 + +0.5
317,931 - -0.3
317,946 - -0.4
317,954 - -0.8
318,113 + +0.1
318,128 + -0.0
318,137 - +0.2
318,148 + -0.0
318,234 - +0.5
318,248 - +1.3
318,249 + +0.8
318,255 + -0.5
318,257 - +1.8
318,257 + +0.3
318,271 - +0.1
318,272 + +1.1
318,277 + +0.0
318,417 - 11661 mRNA_3293 0.14 +0.5
318,425 + 11661 mRNA_3293 0.15 +0.7
318,431 + 11661 mRNA_3293 0.15 -0.4
318,435 + 11661 mRNA_3293 0.16 +0.2
318,451 + 11661 mRNA_3293 0.17 +0.2
318,454 + 11661 mRNA_3293 0.17 -0.0
318,574 - 11661 mRNA_3293 0.25 +0.7
318,577 - 11661 mRNA_3293 0.25 +0.8
318,690 - 11661 mRNA_3293 0.33 +0.9
318,773 + 11661 mRNA_3293 0.38 -0.6
318,774 + 11661 mRNA_3293 0.38 +0.5
319,142 - 11661 mRNA_3293 0.63 +0.1
319,157 + 11661 mRNA_3293 0.64 +0.4
319,309 + 11661 mRNA_3293 0.74 +0.4
319,322 - 11661 mRNA_3293 0.75 +0.5
319,333 + 11661 mRNA_3293 0.76 -0.5
319,334 + 11661 mRNA_3293 0.76 +0.8
319,853 + -2.1

Or see this region's nucleotide sequence