Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3331

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11698 and 11699 are separated by 430 nucleotides mRNA_3330: 11698 - Hypothetical Protein, at 407,279 to 408,287 11698 mRNA_3331: 11699 - Hypothetical Protein, at 408,718 to 409,947 11699

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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407,984 - 11698 mRNA_3330 0.70 -0.7
408,014 + 11698 mRNA_3330 0.73 -0.1
408,037 + 11698 mRNA_3330 0.75 +1.1
408,274 + +0.7
409,863 + +0.6
410,349 + +1.0
410,910 + +0.8
410,919 + +0.5
410,921 - +1.1

Or see this region's nucleotide sequence