Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3360

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11727 and 11728 are separated by 398 nucleotides11728 and 11729 are separated by 420 nucleotides mRNA_3359: 11727 - Hypothetical Protein, at 492,217 to 492,797 11727 mRNA_3360: 11728 - KOG4836 Uncharacterized conserved protein, at 493,196 to 494,520 11728 mRNA_3361: 11729 - K11247 SH3GL endophilin-A, at 494,941 to 495,602 11729

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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492,229 - -0.0
492,243 - +0.9
492,307 + 11727 mRNA_3359 0.15 -0.3
492,323 + 11727 mRNA_3359 0.18 +0.7
492,339 + 11727 mRNA_3359 0.21 -0.6
492,805 + +0.3
493,077 + -1.4
493,444 - 11728 mRNA_3360 0.19 +0.8
493,688 - 11728 mRNA_3360 0.37 +0.2
493,879 - 11728 mRNA_3360 0.52 +0.1
493,928 - 11728 mRNA_3360 0.55 -0.6
494,204 - 11728 mRNA_3360 0.76 +0.8
494,214 - 11728 mRNA_3360 0.77 +0.5
494,245 - 11728 mRNA_3360 0.79 +1.1
494,269 - 11728 mRNA_3360 0.81 -0.5
494,398 - +0.4
494,407 - -0.2
494,414 - +0.2
494,534 + +0.3
494,547 - -0.1
494,572 + -0.0
494,846 + +1.8
495,112 - 11729 mRNA_3361 0.26 +1.1
495,158 + 11729 mRNA_3361 0.33 -0.2
495,239 - 11729 mRNA_3361 0.45 -0.3
495,284 + 11729 mRNA_3361 0.52 +0.2

Or see this region's nucleotide sequence