Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3373

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11740 and 11741 are separated by 242 nucleotides11741 and 11742 are separated by 665 nucleotides mRNA_3372: 11740 - K15103 UCP2_3, SLC25A8_9 solute carrier family 25 (mitochondrial uncoupling protein), member 8/9, at 522,269 to 523,428 11740 mRNA_3373: 11741 - K00390 cysH phosphoadenosine phosphosulfate reductase, at 523,671 to 524,664 11741 mRNA_3374: 11742 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 525,330 to 527,850 11742

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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522,777 - 11740 mRNA_3372 0.44 -1.2
522,808 + 11740 mRNA_3372 0.46 +0.5
522,920 + 11740 mRNA_3372 0.56 +0.2
523,191 + 11740 mRNA_3372 0.79 +0.0
523,195 - 11740 mRNA_3372 0.80 -0.4
523,354 + +0.4
523,536 - -0.8
523,774 - 11741 mRNA_3373 0.10 +0.2
524,099 - 11741 mRNA_3373 0.43 +0.2
524,118 - 11741 mRNA_3373 0.45 -0.1
524,133 + 11741 mRNA_3373 0.46 -0.0
524,490 + 11741 mRNA_3373 0.82 +0.3
524,504 - 11741 mRNA_3373 0.84 +1.0
524,553 - 11741 mRNA_3373 0.89 -0.5
524,647 - +0.3
524,675 - -0.6
524,703 + -0.4
524,825 - +0.4
524,833 - +0.2
524,834 - +0.8
524,838 + +0.4
524,839 + +0.2
524,843 - +1.0
524,843 - +0.3
524,849 - -0.5
524,850 + -0.9
524,850 + +0.3
524,853 - +0.7
524,856 - +0.1
524,860 - +0.2
524,861 + +0.2
524,863 + +0.4
524,864 - -0.3
524,867 - +0.2
524,874 - +1.0
524,878 - +0.8
524,896 - +0.4
524,903 + +0.3
524,909 + +0.4
524,922 - +0.2
524,923 + +0.7
524,966 - +0.1
525,046 - +0.2
525,046 + +0.1
525,053 - +1.9
525,068 - +0.2
525,071 - +1.0
525,078 + +0.1
525,078 - +0.0
525,079 + -0.4
525,080 + -0.9
525,080 + +0.4
525,090 - +1.9
525,094 - -1.2
525,101 + +0.3
525,102 + -0.0
525,126 + +0.6
525,151 + -0.4
525,187 - -0.0
525,216 - +0.7
525,237 - +0.9
525,240 + +0.2
525,256 + +0.2
525,291 - +0.9
525,310 + -0.2
525,326 + +2.8
525,367 + -0.5
525,367 + +1.2
525,497 + +0.9
525,642 - 11742 mRNA_3374 0.12 +0.2

Or see this region's nucleotide sequence