Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3421

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11788 and 11789 are separated by 443 nucleotides11789 and 11790 are separated by 119 nucleotides mRNA_3420: 11788 - HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091, at 53,705 to 57,912 11788 mRNA_3421: 11789 - K14297 NUP98, ADAR2, NUP116 nuclear pore complex protein Nup98-Nup96, at 58,356 to 61,690 11789 mRNA_3422: 11790 - KOG2882 p-Nitrophenyl phosphatase, at 61,810 to 63,146 11790

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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57,408 + 11788 mRNA_3420 0.88 +1.0
57,575 - +0.5
57,711 - +0.1
57,717 - +0.5
57,829 - -0.0
57,865 - +0.7
57,979 + +0.6
57,997 + +2.0
58,017 + +0.0
58,020 - -0.7
58,023 + -0.6
58,028 + +0.4
58,028 - +0.3
58,141 - +0.0
61,858 - +0.5
62,086 - 11790 mRNA_3422 0.21 +0.8
62,428 - 11790 mRNA_3422 0.46 -0.2
62,436 + 11790 mRNA_3422 0.47 +0.6

Or see this region's nucleotide sequence