Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3459

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11826 and 11827 are separated by 158 nucleotides11827 and 11828 are separated by 156 nucleotides mRNA_3458: 11826 - K03857 PIGA, GPI3 phosphatidylinositol glycan, class A, at 145,752 to 147,635 11826 mRNA_3459: 11827 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 147,794 to 151,467 11827 mRNA_3460: 11828 - HMMPfam-Fasciclin domain-PF02469,SUPERFAMILY--SSF82153, at 151,624 to 153,827 11828

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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147,702 + -0.0
148,004 - +0.5
148,011 + +1.7
148,011 + +0.4
148,011 + -0.3
148,129 - -0.0
148,418 - 11827 mRNA_3459 0.17 +0.2
148,468 - 11827 mRNA_3459 0.18 +0.3
148,544 - 11827 mRNA_3459 0.20 +0.7
148,610 - 11827 mRNA_3459 0.22 -0.5
148,627 - 11827 mRNA_3459 0.23 -0.0
148,648 - 11827 mRNA_3459 0.23 +0.1
148,742 + 11827 mRNA_3459 0.26 +0.0
148,907 - 11827 mRNA_3459 0.30 +0.1
148,912 - 11827 mRNA_3459 0.30 +0.9
149,020 + 11827 mRNA_3459 0.33 -0.2
149,096 - 11827 mRNA_3459 0.35 -1.0
149,147 - 11827 mRNA_3459 0.37 -0.2
149,188 + 11827 mRNA_3459 0.38 -0.7
149,478 - 11827 mRNA_3459 0.46 +0.4
149,638 + 11827 mRNA_3459 0.50 +1.0
149,650 + 11827 mRNA_3459 0.51 +0.8
149,654 + 11827 mRNA_3459 0.51 +0.3
149,778 + 11827 mRNA_3459 0.54 +0.6
149,881 - 11827 mRNA_3459 0.57 +0.6
149,908 - 11827 mRNA_3459 0.58 +0.8
149,915 + 11827 mRNA_3459 0.58 +0.4
149,979 + 11827 mRNA_3459 0.59 +0.0
149,981 - 11827 mRNA_3459 0.60 +0.9
150,056 - 11827 mRNA_3459 0.62 -0.6
150,070 + 11827 mRNA_3459 0.62 +0.5
150,071 - 11827 mRNA_3459 0.62 +0.5
150,090 - 11827 mRNA_3459 0.62 +0.7
150,090 - 11827 mRNA_3459 0.62 -0.3
150,215 - 11827 mRNA_3459 0.66 +0.4
150,217 + 11827 mRNA_3459 0.66 +1.4
150,221 - 11827 mRNA_3459 0.66 +0.2
150,294 + 11827 mRNA_3459 0.68 -0.0
150,370 - 11827 mRNA_3459 0.70 +0.1
150,476 - 11827 mRNA_3459 0.73 +1.4
150,535 - 11827 mRNA_3459 0.75 +1.6
150,641 - 11827 mRNA_3459 0.77 -0.2
150,671 - 11827 mRNA_3459 0.78 +0.0
150,794 - 11827 mRNA_3459 0.82 +0.2
150,834 - 11827 mRNA_3459 0.83 -0.2
150,913 - 11827 mRNA_3459 0.85 +1.4
150,916 + 11827 mRNA_3459 0.85 +0.9
150,943 + 11827 mRNA_3459 0.86 +0.9
151,047 + 11827 mRNA_3459 0.89 +0.3
151,093 - 11827 mRNA_3459 0.90 -0.3
151,172 + +0.4
151,281 - +0.7
151,391 - +0.6
151,395 - +0.4
151,397 - -0.0
151,403 - -0.8
151,411 - +0.5
151,434 + +1.8
151,520 + +1.2
151,525 + -0.1
151,529 + +0.0
151,559 + +0.1
151,564 + +0.9
151,568 + -0.2
151,570 + +0.8
151,574 + +1.0
151,710 + +0.1
151,714 - +0.3
151,866 + 11828 mRNA_3460 0.11 +0.3
152,018 - 11828 mRNA_3460 0.18 -0.2
152,362 - 11828 mRNA_3460 0.33 +0.6

Or see this region's nucleotide sequence