Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3493

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11860 and 11861 are separated by 429 nucleotides11861 and 11862 are separated by 638 nucleotides mRNA_3492: 11860 - HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,SUPERFAMILY--SSF53927, at 233,269 to 234,150 11860 mRNA_3493: 11861 - K06944 K06944 uncharacterized protein, at 234,580 to 236,697 11861 mRNA_3494: 11862 - SUPERFAMILY--SSF160104, at 237,336 to 238,428 11862

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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233,638 - 11860 mRNA_3492 0.42 -0.1
233,913 - 11860 mRNA_3492 0.73 +0.9
234,515 + +0.6
235,107 + 11861 mRNA_3493 0.25 +1.0
235,785 - 11861 mRNA_3493 0.57 +1.0
235,841 + 11861 mRNA_3493 0.60 +0.9
235,999 - 11861 mRNA_3493 0.67 +0.5
236,116 - 11861 mRNA_3493 0.73 +0.1
236,177 + 11861 mRNA_3493 0.75 -0.3
237,145 - +0.3
237,154 + +0.8
237,155 - -0.2
237,160 - -0.6
237,163 + +0.4
237,163 - +0.3
237,168 - +0.0
237,168 + -0.9
237,173 - +0.1
237,174 + +0.8
237,179 - -0.7
237,180 + +0.4
237,182 + +0.3
237,214 + +0.3
237,372 + +0.4
237,474 - 11862 mRNA_3494 0.13 -0.5

Or see this region's nucleotide sequence