Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3522

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11889 and 11890 are separated by 709 nucleotides11890 and 11891 are separated by 363 nucleotides mRNA_3521: 11889 - K02900 RP-L27Ae, RPL27A large subunit ribosomal protein L27Ae, at 302,044 to 303,082 11889 mRNA_3522: 11890 - K03008 RPB11, POLR2J DNA-directed RNA polymerase II subunit RPB11, at 303,792 to 304,536 11890 mRNA_3523: 11891 - K08064 NFYA nuclear transcription factor Y, alpha, at 304,900 to 306,087 11891

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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303,150 + +1.1
303,216 - +1.1
304,550 + +0.3
304,553 + +0.3
304,669 + +0.4
304,687 - -0.7
304,702 + -0.7
304,847 + +0.9
304,993 + +0.7
305,003 + -0.0
305,010 + +0.1
305,408 - 11891 mRNA_3523 0.43 +0.3
305,415 - 11891 mRNA_3523 0.43 -0.3

Or see this region's nucleotide sequence