Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3536

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11903 and 11904 are separated by 582 nucleotides mRNA_3535: 11903 - HMMPfam-Protein of unknown function (DUF2419)-PF10343, at 331,726 to 332,711 11903 mRNA_3536: 11904 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 333,294 to 333,991 11904

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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332,759 - -0.4
332,845 - +0.6
332,881 - +0.3
332,963 + -0.2
332,977 - +0.3
333,135 + +0.6
333,427 - 11904 mRNA_3536 0.19 -0.3
333,569 + 11904 mRNA_3536 0.39 +0.1
333,580 - 11904 mRNA_3536 0.41 -0.2
333,683 - 11904 mRNA_3536 0.56 +3.1
333,706 - 11904 mRNA_3536 0.59 +0.7
333,715 - 11904 mRNA_3536 0.60 +0.5
333,716 - 11904 mRNA_3536 0.60 -0.1
333,736 - 11904 mRNA_3536 0.63 +0.7

Or see this region's nucleotide sequence