Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3551

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11918 and 11919 are separated by 418 nucleotides11919 and 11920 are separated by 224 nucleotides mRNA_3550: 11918 - Hypothetical Protein, at 26,790 to 27,797 11918 mRNA_3551: 11919 - K10276 FBXL10_11, KDM2 F-box and leucine-rich repeat protein 10/11, at 28,216 to 30,545 11919 mRNA_3552: 11920 - K10884 XRCC6, KU70, G22P1 ATP-dependent DNA helicase 2 subunit 1, at 30,770 to 33,816 11920

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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27,332 + 11918 mRNA_3550 0.54 -0.4
27,494 + 11918 mRNA_3550 0.70 +0.4
27,737 + +0.4
28,981 - 11919 mRNA_3551 0.33 -0.3
29,331 - 11919 mRNA_3551 0.48 +1.5
29,644 + 11919 mRNA_3551 0.61 +0.9
29,658 - 11919 mRNA_3551 0.62 +0.5
29,739 - 11919 mRNA_3551 0.65 +0.2
29,766 - 11919 mRNA_3551 0.67 +0.3
29,896 + 11919 mRNA_3551 0.72 +1.4
30,066 - 11919 mRNA_3551 0.79 +0.2
30,500 - +0.1
30,650 + -0.4
30,653 - -0.1
30,661 + -0.7
30,789 + -0.6
30,895 + +1.2
30,908 - +0.7
30,975 - -0.3
31,065 + +1.6
31,190 - 11920 mRNA_3552 0.14 +0.3
31,377 + 11920 mRNA_3552 0.20 +0.5

Or see this region's nucleotide sequence