Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3566

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11933 and 11934 are separated by 490 nucleotides11934 and 11935 are separated by 567 nucleotides mRNA_3565: 11933 - KOG0254 Predicted transporter (major facilitator superfamily), at 64,818 to 67,834 11933 mRNA_3566: 11934 - HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664, at 68,325 to 69,478 11934 mRNA_3567: 11935 - KOG1760 Molecular chaperone Prefoldin, subunit 4, at 70,046 to 70,788 11935

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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67,345 - 11933 mRNA_3565 0.84 +1.7
67,730 + -0.3
67,893 - +0.7
67,913 + +1.0
67,917 - +0.0
68,040 - +0.5
68,047 + +0.1
68,052 - +0.1
68,063 - +0.0
68,072 + +0.5
68,075 + +0.3
68,165 - +0.3
68,174 + +0.1
68,174 - -0.4
68,209 + +0.2
68,209 - -0.4
68,214 - -0.4
68,217 + +0.2
68,226 - -0.3
68,226 + +0.2
68,227 + +1.2
68,238 - +1.0
68,239 - -0.0
68,246 + +1.8
68,259 + +1.2
68,289 - -0.0
68,314 + +0.7
68,356 - +1.8
68,390 + -0.6
68,392 - -0.3
68,395 - -0.2
68,500 + 11934 mRNA_3566 0.15 -0.3
68,647 + 11934 mRNA_3566 0.28 +0.6
68,665 + 11934 mRNA_3566 0.29 +0.1
68,939 - 11934 mRNA_3566 0.53 -1.2
69,236 + 11934 mRNA_3566 0.79 -0.4
69,406 - +0.4
69,416 + +0.2
69,522 - +0.2
69,532 + +0.4
69,728 + +0.5
69,827 - -0.9

Or see this region's nucleotide sequence