Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3617

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11984 and 11985 are separated by 748 nucleotides11985 and 11986 are separated by 676 nucleotides mRNA_3616: 11984 - K11600 RRP41, EXOSC4, SKI6 exosome complex component RRP41, at 173,211 to 174,376 11984 mRNA_3617: 11985 - KOG0254 Predicted transporter (major facilitator superfamily), at 175,125 to 177,580 11985 mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178,257 to 178,945 11986

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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174,397 + +0.5
174,411 + +0.4
174,529 - +0.6
174,549 - +0.2
174,563 - +2.0
174,571 + +0.5
174,700 + -0.4
175,006 + +1.4
175,144 - +0.1
175,147 - +0.3
175,409 + 11985 mRNA_3617 0.12 +1.7
175,574 + 11985 mRNA_3617 0.18 -0.6
176,185 - 11985 mRNA_3617 0.43 -0.2
176,477 - 11985 mRNA_3617 0.55 +1.6
176,750 + 11985 mRNA_3617 0.66 +0.1
177,363 + +1.1
177,377 - -0.6
177,390 - +0.2
177,498 + +0.7
177,531 + +0.6
177,654 - +0.5
177,654 - +0.2
177,655 - +0.8
177,661 - -0.7
177,661 + +0.3
177,669 - +0.6
177,672 + +1.0
177,673 + -0.4
177,674 + +0.4
177,675 + -0.1
177,680 - +0.3
177,682 - +0.0
177,691 - +0.3
177,696 + +0.3
177,709 - +0.2
177,710 - +0.4
177,711 - +0.8
177,713 - +0.5
177,717 - +0.4
177,727 - +0.5
177,736 - +0.8
177,736 - +0.8
177,737 + -0.3
177,737 - +1.0
177,743 + +0.9
177,752 + -0.9
177,754 + -0.1
177,755 - +1.9
177,759 - +0.7
177,762 - +0.6
177,763 - +2.4
177,771 - +0.3
177,778 + +1.0
177,787 - -1.4
177,787 - +0.7
177,789 - -0.1
177,791 - -0.5
177,797 - +0.1
177,802 + +0.1
177,804 + +0.9
177,833 - +0.7
177,858 + +0.3
177,877 + +1.2
177,883 - +0.8
177,968 - +0.9
177,979 - +1.6
177,981 + -0.0
177,982 - +1.2
178,124 + -0.4
178,158 - +0.5
178,269 + +0.8
178,440 + 11986 mRNA_3618 0.27 +0.1
178,539 + 11986 mRNA_3618 0.41 +0.5

Or see this region's nucleotide sequence