Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3645

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12012 and 12013 are separated by 990 nucleotides mRNA_3644: 12012 - Hypothetical Protein, at 242,655 to 243,950 12012 mRNA_3645: 12013 - K14439 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1, at 244,941 to 247,626 12013

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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244,103 + +0.0
244,141 - +0.3
244,152 + +0.7
244,171 - -0.4
244,285 + -1.0
244,311 + +0.7
244,327 + +1.7
244,411 + -1.1
244,423 + -1.1
244,435 - -1.2
244,443 + +0.4
244,451 + +2.2
244,576 - +0.1
244,580 + +0.6
244,587 + +0.4
244,591 - +0.1
244,593 - +1.0
244,697 - +1.3
244,722 + -0.2
244,731 + +0.6
244,734 - -0.3
244,742 + +0.8
244,753 + -0.7
244,759 + +0.1
244,763 - +0.9
244,780 + +0.0
244,784 - -1.6
244,785 + +0.5
244,886 + +0.7
244,898 - -0.2
244,949 + +0.4
245,066 + +0.2
248,336 + -0.3

Or see this region's nucleotide sequence