Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3666

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12034 and 12035 are separated by 233 nucleotides mRNA_3666: 12034 - K16055 TPS trehalose 6-phosphate synthase/phosphatase, at 297,311 to 299,921 12034 mRNA_3667: 12035 - KOG3455 Predicted membrane protein, at 300,155 to 301,036 12035

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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296,316 + +0.1
296,319 + +0.0
296,431 - +0.9
296,610 - -0.2
296,612 - -0.3
296,626 + +1.1
296,768 - -0.2
296,781 + -0.7
296,781 + +1.1
296,912 + -1.3
296,912 + -0.9
296,941 + -0.3
297,186 - +0.8
297,354 + +0.5
297,917 - 12034 mRNA_3666 0.23 +0.1
298,091 - 12034 mRNA_3666 0.30 +0.5
298,368 - 12034 mRNA_3666 0.40 -0.1
299,114 + 12034 mRNA_3666 0.69 +0.5
299,817 + +0.7
300,079 + +0.0

Or see this region's nucleotide sequence