Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3679

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12046 and 12047 are separated by 37 nucleotides12047 and 12048 are separated by 165 nucleotides mRNA_3678: 12046 - K14530 RPP40 ribonucleases P/MRP protein subunit RPP40, at 324,600 to 326,289 12046 mRNA_3679: 12047 - K02370 EXTL3 alpha-1,4-N-acetylglucosaminyltransferase EXTL3, at 326,327 to 327,835 12047 mRNA_3680: 12048 - Hypothetical Protein, at 328,001 to 330,038 12048

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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326,123 - +0.5
326,454 - -0.4
326,456 - +0.0
326,464 + +0.3
326,779 + 12047 mRNA_3679 0.30 +0.5
326,913 - 12047 mRNA_3679 0.39 -1.2
327,068 + 12047 mRNA_3679 0.49 -0.1
327,069 - 12047 mRNA_3679 0.49 +1.3
327,082 + 12047 mRNA_3679 0.50 -0.3
327,183 - 12047 mRNA_3679 0.57 -0.6
327,201 + 12047 mRNA_3679 0.58 +0.5
327,319 + 12047 mRNA_3679 0.66 +0.6
327,325 + 12047 mRNA_3679 0.66 -1.9
327,609 - 12047 mRNA_3679 0.85 +0.6
327,622 - 12047 mRNA_3679 0.86 -0.1
327,623 - 12047 mRNA_3679 0.86 +1.2
327,628 - 12047 mRNA_3679 0.86 -0.1
327,650 + 12047 mRNA_3679 0.88 +0.2
327,653 - 12047 mRNA_3679 0.88 +0.8
327,656 + 12047 mRNA_3679 0.88 -1.1
327,768 - -0.4
327,772 - +0.3
327,788 + +1.2
327,788 + +0.4
327,913 - +0.4
327,925 - +0.0
327,938 - +1.4
328,125 + +1.1
328,655 - 12048 mRNA_3680 0.32 -0.1
328,659 + 12048 mRNA_3680 0.32 +0.5

Or see this region's nucleotide sequence