Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3713

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12080 and 12081 are separated by 255 nucleotides12081 and 12082 are separated by 503 nucleotides mRNA_3712: 12080 - K00003 E1.1.1.3 homoserine dehydrogenase, at 410,154 to 411,574 12080 mRNA_3713: 12081 - KOG4756 Mitochondrial ribosomal protein L27, at 411,830 to 412,320 12081 mRNA_3714: 12082 - K14006 SEC23 protein transport protein SEC23, at 412,824 to 415,636 12082

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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411,630 + +1.3
411,636 - -0.5
411,645 - -0.1
411,772 + +1.2
411,776 + +0.5
411,788 + +0.2
412,370 + +1.2
412,517 - -1.0
412,520 - -0.6
412,520 - -0.3
412,647 - -0.2
412,648 - -0.5
412,653 - +1.0
412,669 - +1.3
412,776 - +0.8

Or see this region's nucleotide sequence