Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3735

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12102 and 12103 are separated by 152 nucleotides12103 and 12104 are separated by 247 nucleotides mRNA_3734: 12102 - Interpro Protein HRI1, at 460,954 to 461,748 12102 mRNA_3735: 12103 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 461,901 to 463,089 12103 mRNA_3736: 12104 - K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 463,337 to 464,527 12104

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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460,901 - -0.3
461,224 - 12102 mRNA_3734 0.34 +1.3
461,243 - 12102 mRNA_3734 0.36 +0.4
461,513 - 12102 mRNA_3734 0.70 +0.4
461,523 + 12102 mRNA_3734 0.72 +1.0
461,562 + 12102 mRNA_3734 0.76 +0.2
461,992 + +0.3
461,996 + +0.6
462,113 - 12103 mRNA_3735 0.18 +0.5
462,143 - 12103 mRNA_3735 0.20 +0.6
462,282 + 12103 mRNA_3735 0.32 +0.7
462,566 + 12103 mRNA_3735 0.56 +1.1
462,884 + 12103 mRNA_3735 0.83 +0.3
462,885 - 12103 mRNA_3735 0.83 +0.9
463,740 + 12104 mRNA_3736 0.34 +1.2
463,754 + 12104 mRNA_3736 0.35 -0.4
463,990 - 12104 mRNA_3736 0.55 +0.8

Or see this region's nucleotide sequence