Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3741

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12107 and 12108 are separated by 313 nucleotides12108 and 12109 overlap by 8 nucleotides12109 and 12110 are separated by 566 nucleotides mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468,433 to 469,585 12107 mRNA_3740: 12108 - Hypothetical Protein, at 469,899 to 470,347 12108 mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470,340 to 473,925 12109 mRNA_3742: 12110 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 474,492 to 476,469 12110

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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469,543 + +0.9
469,589 - -0.1
469,597 + -0.7
469,652 + +0.7
469,722 + +0.5
469,724 - +0.9
469,742 + +0.2
469,742 + +0.5
469,742 + -0.7
469,753 + -0.1
469,823 + +0.4
469,825 + +0.4
469,849 - +0.1
469,877 + +0.5
469,878 + -0.2
469,881 - +1.2
469,881 - -0.3
469,892 + -0.5
469,895 + +0.9
469,897 + +0.1
469,939 + +0.0
469,962 - 12108 mRNA_3740 0.14 +0.8
469,963 - 12108 mRNA_3740 0.14 +0.6
469,963 - 12108 mRNA_3740 0.14 +0.6
469,965 + 12108 mRNA_3740 0.15 +0.2
469,965 - 12108 mRNA_3740 0.15 +0.5
469,967 - 12108 mRNA_3740 0.15 +1.1
469,968 + 12108 mRNA_3740 0.15 +1.7
469,968 - 12108 mRNA_3740 0.15 +0.2
469,970 + 12108 mRNA_3740 0.16 +1.2
469,984 - 12108 mRNA_3740 0.19 +0.6
469,998 + 12108 mRNA_3740 0.22 +0.2
470,000 + 12108 mRNA_3740 0.22 -2.0
470,002 - 12108 mRNA_3740 0.23 +0.6
470,002 - 12108 mRNA_3740 0.23 +0.8
470,018 - 12108 mRNA_3740 0.27 +0.7
470,041 + 12108 mRNA_3740 0.32 -0.1
470,052 - 12108 mRNA_3740 0.34 +0.3
470,064 - 12108 mRNA_3740 0.37 -0.4
470,121 + 12108 mRNA_3740 0.49 +0.2
470,192 + 12108 mRNA_3740 0.65 +0.2
470,250 + 12108 mRNA_3740 0.78 -0.5
470,259 + 12108 mRNA_3740 0.80 -0.4
470,291 + 12108 mRNA_3740 0.87 +0.3
470,325 + +0.7
470,430 - +0.5
470,478 - +0.5
470,716 - 12109 mRNA_3741 0.10 +0.6
470,861 - 12109 mRNA_3741 0.15 +0.9
471,193 + 12109 mRNA_3741 0.24 -0.4
471,334 - 12109 mRNA_3741 0.28 +1.0
472,400 + 12109 mRNA_3741 0.57 -0.1
473,174 - 12109 mRNA_3741 0.79 +0.5
474,092 - +0.9
474,873 - 12110 mRNA_3742 0.19 +0.7

Or see this region's nucleotide sequence