Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3769

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12136 and 12137 are separated by 195 nucleotides12137 and 12138 are separated by 303 nucleotides mRNA_3768: 12136 - HMMPfam-Protein of unknown function (DUF1275)-PF06912, at 540,069 to 541,238 12136 mRNA_3769: 12137 - K10669 TRPT1, TPT1 2'-phosphotransferase, at 541,434 to 542,462 12137 mRNA_3770: 12138 - K12606 RCD1, CNOT9, CAF40 CCR4-NOT transcription complex subunit 9, at 542,766 to 544,325 12138

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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540,498 + 12136 mRNA_3768 0.37 +0.7
540,656 + 12136 mRNA_3768 0.50 -0.2
540,840 + 12136 mRNA_3768 0.66 +0.2
541,380 - +1.0
542,541 + +1.3
542,556 + +0.2
542,564 + +0.8
542,854 + +0.4
543,006 + 12138 mRNA_3770 0.15 -0.1
543,397 - 12138 mRNA_3770 0.40 -0.2

Or see this region's nucleotide sequence