Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3773

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12140 and 12141 are separated by 157 nucleotides mRNA_3772: 12140 - K17662 CBP3, UQCC cytochrome b pre-mRNA-processing protein 3, at 546,453 to 547,644 12140 mRNA_3773: 12141 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 547,802 to 549,606 12141

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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546,914 + 12140 mRNA_3772 0.39 +0.5
547,417 - 12140 mRNA_3772 0.81 +0.6
547,426 + 12140 mRNA_3772 0.82 +1.0
547,850 - +0.3
548,035 - 12141 mRNA_3773 0.13 +0.2
548,390 - 12141 mRNA_3773 0.33 +0.8
548,680 - 12141 mRNA_3773 0.49 +0.6
549,048 - 12141 mRNA_3773 0.69 +0.7
549,063 + 12141 mRNA_3773 0.70 -0.1
549,749 + +0.9
549,783 - +0.1
549,831 - +0.7
549,881 - +0.7
549,890 + -0.9
549,908 - +0.9
549,933 - +0.6
549,933 + +0.1
549,938 + +0.1
549,953 - +0.4
549,955 - +0.5
550,056 - +0.9
550,078 - +0.8
550,352 + +0.1
550,362 + +1.2
550,488 + +0.2
550,490 - +0.8

Or see this region's nucleotide sequence