Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3816

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12183 and 12184 are separated by 290 nucleotides12184 and 12185 are separated by 303 nucleotides mRNA_3815: 12183 - K06631 PLK1 polo-like kinase 1, at 644,354 to 647,784 12183 mRNA_3816: 12184 - KOG3613 Dopey and related predicted leucine zipper transcription factors, at 648,075 to 655,221 12184 mRNA_3817: 12185 - SUPERFAMILY--SSF52047, at 655,525 to 657,844 12185

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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647,270 + 12183 mRNA_3815 0.85 -0.2
648,244 + +0.3
648,326 - +0.3
648,362 - +1.9
648,420 + +0.2
648,523 - -0.4
648,535 - -0.8
648,739 - +0.5
648,791 - 12184 mRNA_3816 0.10 +0.4
648,854 + 12184 mRNA_3816 0.11 +0.8
648,989 + 12184 mRNA_3816 0.13 -1.2
649,019 - 12184 mRNA_3816 0.13 -0.4
649,120 - 12184 mRNA_3816 0.15 +0.7
649,363 - 12184 mRNA_3816 0.18 +0.2
649,464 + 12184 mRNA_3816 0.19 +1.3
649,561 - 12184 mRNA_3816 0.21 +0.5
649,576 + 12184 mRNA_3816 0.21 +0.4
649,665 + 12184 mRNA_3816 0.22 +0.2
650,007 + 12184 mRNA_3816 0.27 +0.3
650,120 - 12184 mRNA_3816 0.29 +0.3
650,144 - 12184 mRNA_3816 0.29 +0.8
650,665 - 12184 mRNA_3816 0.36 +0.6
650,911 - 12184 mRNA_3816 0.40 +0.2
650,950 + 12184 mRNA_3816 0.40 +0.6
650,950 - 12184 mRNA_3816 0.40 +1.2
650,950 - 12184 mRNA_3816 0.40 +0.6
651,044 + 12184 mRNA_3816 0.42 -1.3
651,088 + 12184 mRNA_3816 0.42 +0.2
651,255 + 12184 mRNA_3816 0.44 +2.1
651,496 + 12184 mRNA_3816 0.48 +0.2
651,496 + 12184 mRNA_3816 0.48 -0.2
651,534 + 12184 mRNA_3816 0.48 +0.4
651,579 + 12184 mRNA_3816 0.49 +0.5
651,792 - 12184 mRNA_3816 0.52 +0.6
651,959 - 12184 mRNA_3816 0.54 +0.2
652,388 - 12184 mRNA_3816 0.60 +0.5
652,468 + 12184 mRNA_3816 0.61 +0.4
653,021 + 12184 mRNA_3816 0.69 -0.1
653,114 - 12184 mRNA_3816 0.71 +0.6
653,148 - 12184 mRNA_3816 0.71 +0.5
653,268 + 12184 mRNA_3816 0.73 -0.2
653,333 + 12184 mRNA_3816 0.74 +1.2
653,347 - 12184 mRNA_3816 0.74 +0.3
653,355 + 12184 mRNA_3816 0.74 +0.1
653,432 + 12184 mRNA_3816 0.75 +0.3
653,486 + 12184 mRNA_3816 0.76 +0.0
653,512 - 12184 mRNA_3816 0.76 +0.4
653,896 + 12184 mRNA_3816 0.81 +0.5
654,319 + 12184 mRNA_3816 0.87 -0.1
654,630 + +0.3
654,720 + +1.3
654,874 - +0.2
654,877 - +0.8
654,903 - +0.9
655,022 - -1.4
655,026 - +0.3
655,039 + +0.0
655,150 - +0.9
655,169 + -0.8
655,179 + -0.2
655,185 - +1.6
655,191 + +0.3
655,195 + -1.2
655,211 - +0.7
655,342 - +1.1
655,496 - +0.9
655,507 - +0.6
655,538 - +0.2
655,564 - -0.3
655,771 - 12185 mRNA_3817 0.11 -1.0
655,833 - 12185 mRNA_3817 0.13 +0.7
656,113 - 12185 mRNA_3817 0.25 -1.4

Or see this region's nucleotide sequence