Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3856

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12223 and 12224 are separated by 151 nucleotides12224 and 12225 are separated by 162 nucleotides mRNA_3855: 12223 - SUPERFAMILY--SSF52047, at 750,615 to 752,769 12223 mRNA_3856: 12224 - Hypothetical Protein, at 752,921 to 753,919 12224 mRNA_3857: 12225 - Interpro Mysoin-binding motif of peroxisomes, at 754,082 to 757,282 12225

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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752,040 - 12223 mRNA_3855 0.66 +0.8
752,350 + 12223 mRNA_3855 0.81 +0.0
752,492 + 12223 mRNA_3855 0.87 -0.5
752,688 - +0.7
752,784 - +0.9
752,794 + -0.3
752,799 - +0.8
752,801 + -0.0
752,935 + -0.2
752,938 - +0.7
752,944 + +0.7
753,282 + 12224 mRNA_3856 0.36 +0.6
753,655 - 12224 mRNA_3856 0.73 +0.3
753,812 - 12224 mRNA_3856 0.89 -0.3
753,817 - 12224 mRNA_3856 0.90 +2.7

Or see this region's nucleotide sequence