Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3869

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12236 and 12237 are separated by 208 nucleotides12237 and 12238 are separated by 293 nucleotides mRNA_3868: 12236 - KOG0603 Ribosomal protein S6 kinase, at 783,972 to 787,068 12236 mRNA_3869: 12237 - KOG3207 Beta-tubulin folding cofactor E, at 787,277 to 789,620 12237 mRNA_3870: 12238 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407,SUPERFAMILY--SSF53448, at 789,914 to 792,634 12238

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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786,467 + 12236 mRNA_3868 0.81 -1.6
786,632 + 12236 mRNA_3868 0.86 -0.1
786,635 - 12236 mRNA_3868 0.86 -0.3
787,396 - +1.0
787,779 - 12237 mRNA_3869 0.21 +0.2
788,134 - 12237 mRNA_3869 0.37 -0.2
788,237 - 12237 mRNA_3869 0.41 +1.1
788,378 - 12237 mRNA_3869 0.47 -0.0
788,379 + 12237 mRNA_3869 0.47 -0.6
788,384 - 12237 mRNA_3869 0.47 -0.4
788,667 - 12237 mRNA_3869 0.59 +0.4
788,859 - 12237 mRNA_3869 0.67 +0.6
788,930 - 12237 mRNA_3869 0.71 +0.4
788,964 + 12237 mRNA_3869 0.72 +0.6
789,098 - 12237 mRNA_3869 0.78 +2.3
789,228 + 12237 mRNA_3869 0.83 -0.2
789,386 + +2.1
789,394 + -0.5
789,395 + -0.1
789,709 - +0.2
789,719 + -0.0
789,844 - +0.6
790,002 + +0.2
790,309 - 12238 mRNA_3870 0.15 -0.0
790,350 - 12238 mRNA_3870 0.16 +1.0
790,482 + 12238 mRNA_3870 0.21 -0.5
790,616 - 12238 mRNA_3870 0.26 +0.3

Or see this region's nucleotide sequence