Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3871

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12238 and 12239 are separated by 304 nucleotides12239 and 12240 are separated by 925 nucleotides mRNA_3870: 12238 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407,SUPERFAMILY--SSF53448, at 789,914 to 792,634 12238 mRNA_3871: 12239 - K10295 FBXO9 F-box protein 9, at 792,939 to 793,930 12239 mRNA_3872: 12240 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 794,856 to 799,909 12240

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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792,079 - 12238 mRNA_3870 0.80 +0.2
792,143 + 12238 mRNA_3870 0.82 +0.7
792,238 - 12238 mRNA_3870 0.85 -0.5
792,240 + 12238 mRNA_3870 0.85 +0.2
792,245 - 12238 mRNA_3870 0.86 -0.0
792,246 - 12238 mRNA_3870 0.86 +0.1
792,264 - 12238 mRNA_3870 0.86 -0.1
792,403 - -0.0
792,405 + +0.5
792,419 + +0.5
792,420 - +0.6
792,548 + -0.1
792,553 + +1.4
792,560 - +0.3
792,595 - +0.4
792,608 - +0.4
792,680 - +1.4
792,698 - +1.1
792,700 - +0.1
792,731 - +0.4
792,733 + +0.3
792,757 - +1.2
792,765 + +0.4
792,856 + -0.4
792,879 + +0.4
792,900 - +0.4
792,938 - +0.3
792,950 - -0.2
792,951 + +0.7
793,072 + 12239 mRNA_3871 0.13 +0.3
793,240 - 12239 mRNA_3871 0.30 +0.2
793,269 - 12239 mRNA_3871 0.33 +0.1
793,361 + 12239 mRNA_3871 0.43 -1.0
793,376 - 12239 mRNA_3871 0.44 +0.3
793,423 + 12239 mRNA_3871 0.49 -0.8
793,449 - 12239 mRNA_3871 0.51 +0.6
793,491 - 12239 mRNA_3871 0.56 +0.2
793,498 - 12239 mRNA_3871 0.56 -0.6
793,506 + 12239 mRNA_3871 0.57 +0.4
793,507 + 12239 mRNA_3871 0.57 +0.9
793,518 + 12239 mRNA_3871 0.58 +0.4
793,525 + 12239 mRNA_3871 0.59 +1.2
793,677 - 12239 mRNA_3871 0.74 +0.4
793,710 - 12239 mRNA_3871 0.78 +0.4
793,744 - 12239 mRNA_3871 0.81 +2.0
793,795 + 12239 mRNA_3871 0.86 -1.4
793,805 + 12239 mRNA_3871 0.87 +0.2
793,843 - -0.2
794,074 + -0.0
794,101 + -0.0
794,101 + -0.2
794,193 + +0.1
794,211 - -0.8
794,484 - +0.5
794,488 - +0.7
794,500 + +0.2
794,657 - +0.9
794,671 - +0.1
794,673 + -0.8
794,691 - +0.5
794,696 - +0.3
794,841 + +0.1

Or see this region's nucleotide sequence