Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3899

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12266 and 12267 are separated by 331 nucleotides12267 and 12268 are separated by 177 nucleotides mRNA_3898: 12266 - HMMPfam-Acetyltransferase (GNAT) domain-PF13508,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848,183 to 849,090 12266 mRNA_3899: 12267 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 849,422 to 850,420 12267 mRNA_3900: 12268 - SUPERFAMILY--SSF55729, at 850,598 to 851,508 12268

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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848,659 - 12266 mRNA_3898 0.52 +0.8
848,821 + 12266 mRNA_3898 0.70 +0.5
848,948 - 12266 mRNA_3898 0.84 +0.7
849,792 - 12267 mRNA_3899 0.37 +0.6
850,417 + -0.9
850,477 + +1.1
850,718 + 12268 mRNA_3900 0.13 +0.0
851,030 + 12268 mRNA_3900 0.47 +0.2
851,382 + 12268 mRNA_3900 0.86 +0.1

Or see this region's nucleotide sequence