Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3911

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12278 and 12279 are separated by 327 nucleotides12279 and 12280 are separated by 147 nucleotides mRNA_3910: 12278 - KOG0587 Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases, at 874,209 to 878,555 12278 mRNA_3911: 12279 - K18655 DDX19, DBP5 ATP-dependent RNA helicase DDX19/DBP5, at 878,883 to 880,998 12279 mRNA_3912: 12280 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 881,146 to 884,820 12280

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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877,905 - 12278 mRNA_3910 0.85 +0.0
878,012 - 12278 mRNA_3910 0.87 +1.3
878,142 + -0.9
878,284 + +0.0
878,492 - +0.3
878,526 + +0.0
878,636 + -0.9
878,638 - +0.5
878,645 - -0.8
878,665 + +0.5
878,667 + +0.0
878,788 - +0.6
878,791 - +0.2
878,791 - +0.1
878,796 + +0.5
878,797 + +0.5
878,805 - +0.7
878,806 + +0.8
878,827 - -1.0
881,039 + +0.6
881,041 + +0.9
881,041 + -1.2
881,050 + +0.8
881,061 + -0.1
881,068 + +0.2
881,192 - -0.0
881,195 + +0.6
881,226 + +0.7
881,507 + +0.1
881,508 - +0.7
881,627 - 12280 mRNA_3912 0.13 +0.6
881,921 + 12280 mRNA_3912 0.21 +1.4

Or see this region's nucleotide sequence