Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3921

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12289 and 12290 are separated by 442 nucleotides mRNA_3921: 12289 - Hypothetical Protein, at 910,029 to 911,741 12289 mRNA_3922: 12290 - K11099 SNRPG, SMG small nuclear ribonucleoprotein G, at 912,184 to 912,720 12290

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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909,062 + +0.7
909,070 - +0.5
909,078 - -0.0
909,080 - +1.6
909,141 + +0.5
909,237 - +0.5
909,367 + +0.1
909,390 - +0.2
909,407 + -0.0
909,507 + +1.7
909,519 - +0.9
909,519 - +1.1
909,560 + +0.5
909,657 + +0.2
909,820 - +0.2
909,994 + +0.9
910,840 - 12289 mRNA_3921 0.47 +0.4
911,122 - 12289 mRNA_3921 0.64 -0.6
911,139 + 12289 mRNA_3921 0.65 +0.0
911,145 + 12289 mRNA_3921 0.65 -0.5
911,803 + +0.5
911,979 + +2.8
911,984 - -0.8
911,987 + +0.5
912,009 + +0.4
912,110 + +0.6
912,116 - +0.5
912,119 - +0.4
912,123 - -0.1
912,125 - -0.2
912,126 - +0.2
912,145 - +0.7
912,149 - +0.2

Or see this region's nucleotide sequence