Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3946

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12313 and 12314 are separated by 213 nucleotides12314 and 12315 are separated by 123 nucleotides mRNA_3945: 12313 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 963,699 to 967,662 12313 mRNA_3946: 12314 - K06176 truD, PUS7 tRNA pseudouridine13 synthase, at 967,876 to 970,743 12314 mRNA_3947: 12315 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 970,867 to 972,281 12315

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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966,921 - 12313 mRNA_3945 0.81 +0.5
967,020 + 12313 mRNA_3945 0.84 +0.3
967,636 - +0.5
967,759 + +1.2
967,909 + -0.4
968,235 + 12314 mRNA_3946 0.13 -0.3
968,527 - 12314 mRNA_3946 0.23 -0.7
968,539 - 12314 mRNA_3946 0.23 -1.0
969,609 + 12314 mRNA_3946 0.60 +1.2
969,741 - 12314 mRNA_3946 0.65 +0.1
970,443 - 12314 mRNA_3946 0.90 +1.4
970,448 + 12314 mRNA_3946 0.90 +0.0
970,456 - 12314 mRNA_3946 0.90 +1.4
970,596 + +0.9
970,727 + +0.8
970,730 - +0.2
970,740 + -1.5
970,740 - +0.6
970,744 + -0.4
970,784 + -1.2
970,790 + -0.2
970,791 - +1.1
970,795 - -0.2
970,799 - -0.1
970,817 + +2.1
970,818 - +1.4
970,825 + +0.6
970,914 - +1.2
970,947 + +0.4
971,098 - 12315 mRNA_3947 0.16 +0.8
971,104 - 12315 mRNA_3947 0.17 -0.3
971,104 - 12315 mRNA_3947 0.17 -1.4
971,121 + 12315 mRNA_3947 0.18 +0.9
971,250 - 12315 mRNA_3947 0.27 +0.1
971,667 - 12315 mRNA_3947 0.57 -0.3
971,677 + 12315 mRNA_3947 0.57 +0.8

Or see this region's nucleotide sequence