Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3968

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12335 and 12336 are separated by 139 nucleotides12336 and 12337 are separated by 835 nucleotides mRNA_3967: 12335 - KOG1972 Uncharacterized conserved protein, at 1,018,867 to 1,022,845 12335 mRNA_3968: 12336 - HMMPfam-Thaumatin family-PF00314,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 1,022,985 to 1,024,769 12336 mRNA_3969: 12337 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 1,025,605 to 1,026,362 12337

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,022,053 - 12335 mRNA_3967 0.80 +0.3
1,022,129 + 12335 mRNA_3967 0.82 +0.2
1,022,743 - +0.3
1,022,754 + +0.6
1,023,011 + -0.0
1,023,610 + 12336 mRNA_3968 0.35 -0.1
1,023,627 + 12336 mRNA_3968 0.36 +1.3
1,024,516 - 12336 mRNA_3968 0.86 -0.1
1,024,614 - +0.4
1,024,615 + +0.1
1,024,789 + -0.4
1,025,035 - -0.0
1,025,048 + +0.1
1,025,051 + +0.3
1,025,065 - +0.4
1,025,217 + -0.6
1,025,239 - +0.5
1,025,339 - +0.2
1,025,359 + +0.2
1,025,389 + -0.4
1,025,498 + -0.1

Or see this region's nucleotide sequence