Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3976

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12343 and 12344 are separated by 400 nucleotides12344 and 12345 are separated by 234 nucleotides mRNA_3975: 12343 - KOG1938 Protein with predicted involvement in meiosis (GSG1), at 1,041,563 to 1,046,675 12343 mRNA_3976: 12344 - K20473 NBAS neuroblastoma-amplified sequence, at 1,047,076 to 1,050,963 12344 mRNA_3977: 12345 - KOG4689 Predicted RNase, at 1,051,198 to 1,052,896 12345

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,046,596 - +0.0
1,046,854 - +0.8
1,046,855 + +0.1
1,046,863 - -0.8
1,046,864 + -0.2
1,046,894 - +1.4
1,047,001 - -1.4
1,050,379 + 12344 mRNA_3976 0.85 +1.5
1,051,031 + +0.4
1,051,198 + -0.0
1,051,329 - +0.2
1,051,490 - 12345 mRNA_3977 0.17 -0.3
1,051,513 + 12345 mRNA_3977 0.19 +0.4
1,051,546 + 12345 mRNA_3977 0.20 +0.1
1,051,655 + 12345 mRNA_3977 0.27 +0.7

Or see this region's nucleotide sequence