Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3989

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12356 and 12357 are separated by 343 nucleotides12357 and 12358 are separated by 125 nucleotides mRNA_3988: 12356 - Hypothetical Protein, at 1,084,806 to 1,085,290 12356 mRNA_3989: 12357 - BLAST Ribonucleases P/MRP protein subunit pop3 [Hypsizygus ..., at 1,085,634 to 1,087,441 12357 mRNA_3990: 12358 - K07561 DPH1, dph2 2-(3-amino-3-carboxypropyl)histidine synthase, at 1,087,567 to 1,089,527 12358

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,084,738 + +1.1
1,084,774 - +0.9
1,085,170 - 12356 mRNA_3988 0.75 +0.9
1,087,507 + +0.4
1,087,528 - -0.6
1,087,538 + -0.0
1,087,539 + +0.6
1,087,700 + +2.6
1,088,123 + 12358 mRNA_3990 0.28 +1.1
1,088,430 + 12358 mRNA_3990 0.44 +0.3

Or see this region's nucleotide sequence