Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4064

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12431 and 12432 are separated by 105 nucleotides12432 and 12433 are separated by 138 nucleotides mRNA_4063: 12431 - K10777 LIG4, DNL4 DNA ligase 4, at 1,264,892 to 1,269,621 12431 mRNA_4064: 12432 - HMMPfam-Rdx family-PF10262,SUPERFAMILY--SSF52833, at 1,269,727 to 1,270,597 12432 mRNA_4065: 12433 - KOG1198 Zinc-binding oxidoreductase, at 1,270,736 to 1,272,325 12433

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,269,070 - 12431 mRNA_4063 0.88 +0.2
1,269,071 - 12431 mRNA_4063 0.88 +0.1
1,269,195 - +0.4
1,270,051 + 12432 mRNA_4064 0.37 +0.6
1,270,090 + 12432 mRNA_4064 0.42 -0.1
1,270,352 + 12432 mRNA_4064 0.72 +0.4
1,270,365 - 12432 mRNA_4064 0.73 +1.4
1,270,365 - 12432 mRNA_4064 0.73 -0.1
1,270,369 - 12432 mRNA_4064 0.74 +0.3
1,270,383 + 12432 mRNA_4064 0.75 +0.1
1,270,644 - -0.5
1,270,646 + +0.2
1,270,650 + +0.6
1,270,663 - +1.2
1,270,664 - +0.2
1,270,664 - +0.8
1,270,664 + -0.5
1,270,667 + -0.2
1,270,671 - -1.4
1,270,804 - +0.6
1,270,807 - -0.4
1,270,808 - -0.9
1,270,901 - 12433 mRNA_4065 0.10 +0.6
1,271,102 + 12433 mRNA_4065 0.23 +0.0
1,271,408 - 12433 mRNA_4065 0.42 +1.4

Or see this region's nucleotide sequence