Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4104

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12471 and 12472 are separated by 61 nucleotides12472 and 12473 are separated by 205 nucleotides mRNA_4103: 12471 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 1,365,170 to 1,366,480 12471 mRNA_4104: 12472 - K06664 PEX2, PXMP3 peroxin-2, at 1,366,542 to 1,368,215 12472 mRNA_4105: 12473 - K15306 RANBP1 Ran-binding protein 1, at 1,368,421 to 1,369,571 12473

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,366,299 - 12471 mRNA_4103 0.86 -1.0
1,366,437 + +0.0
1,366,618 - +0.5
1,367,051 - 12472 mRNA_4104 0.30 +0.9
1,368,108 + -0.6
1,368,231 - -0.6
1,368,233 + +0.4
1,368,234 - +1.5
1,368,237 + -0.5
1,368,251 - -0.1

Or see this region's nucleotide sequence