Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4120

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12488 and 12489 are separated by 180 nucleotides mRNA_4120: 12488 - Hypothetical Protein, at 1,398,627 to 1,399,035 12488 mRNA_4121: 12489 - KOG3195 Uncharacterized membrane protein NPD008/CGI-148, at 1,399,216 to 1,400,320 12489

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,397,816 + +0.4
1,397,957 - +0.0
1,398,073 + -0.3
1,398,360 + +0.5
1,398,360 + -0.1
1,398,362 - +0.5
1,398,516 + +1.7
1,398,536 + -0.2
1,398,536 + -0.5
1,398,537 + -0.0
1,398,539 + +0.6
1,398,560 + -0.2
1,398,565 + +0.6
1,398,650 + -0.1
1,398,668 + 12488 mRNA_4120 0.10 +1.6
1,398,684 + 12488 mRNA_4120 0.14 -0.3
1,398,686 + 12488 mRNA_4120 0.14 +0.1
1,398,686 + 12488 mRNA_4120 0.14 +0.1
1,398,691 - 12488 mRNA_4120 0.16 -0.7
1,398,692 - 12488 mRNA_4120 0.16 +0.2
1,398,694 + 12488 mRNA_4120 0.16 +1.4
1,398,705 + 12488 mRNA_4120 0.19 +0.5
1,398,714 + 12488 mRNA_4120 0.21 +0.4
1,398,754 - 12488 mRNA_4120 0.31 +0.2
1,398,840 + 12488 mRNA_4120 0.52 -0.3
1,398,854 - 12488 mRNA_4120 0.56 +0.2
1,398,855 + 12488 mRNA_4120 0.56 +0.2
1,398,855 + 12488 mRNA_4120 0.56 -0.4
1,398,855 - 12488 mRNA_4120 0.56 -0.2
1,398,856 - 12488 mRNA_4120 0.56 +0.3
1,398,857 + 12488 mRNA_4120 0.56 +0.6
1,398,857 + 12488 mRNA_4120 0.56 +1.9
1,398,861 - 12488 mRNA_4120 0.57 -0.3
1,398,861 - 12488 mRNA_4120 0.57 -0.4
1,398,861 + 12488 mRNA_4120 0.57 +0.0
1,398,866 - 12488 mRNA_4120 0.58 +0.4
1,398,874 + 12488 mRNA_4120 0.60 +0.5
1,398,875 + 12488 mRNA_4120 0.61 -0.7
1,398,881 + 12488 mRNA_4120 0.62 -0.0
1,398,882 + 12488 mRNA_4120 0.62 -0.5
1,398,888 + 12488 mRNA_4120 0.64 +1.7
1,398,901 - 12488 mRNA_4120 0.67 +0.4
1,399,007 - +0.0
1,399,007 + +0.2
1,399,015 - +1.5
1,399,024 - -0.2
1,399,029 - -0.2
1,399,031 - -0.3
1,399,056 - +1.2
1,399,057 - -0.1
1,399,134 + +0.8
1,399,135 + +0.2
1,399,140 - +0.1
1,399,147 + -0.9
1,399,325 - +0.8
1,399,444 - 12489 mRNA_4121 0.21 -0.1
1,399,472 + 12489 mRNA_4121 0.23 +0.9
1,399,475 + 12489 mRNA_4121 0.23 -0.7
1,399,483 - 12489 mRNA_4121 0.24 +0.8
1,399,751 - 12489 mRNA_4121 0.48 +0.3
1,399,762 + 12489 mRNA_4121 0.49 +1.1

Or see this region's nucleotide sequence