Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4123

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12490 and 12491 are separated by 285 nucleotides12491 and 12492 are separated by 885 nucleotides mRNA_4122: 12490 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 1,400,543 to 1,402,480 12490 mRNA_4123: 12491 - KOG4510 Permease of the drug/metabolite transporter (DMT) superfamily, at 1,402,766 to 1,404,670 12491 mRNA_4124: 12492 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 1,405,556 to 1,407,296 12492

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
1,402,535 + -1.1
1,402,550 + -0.6
1,402,551 - -0.1
1,402,557 - +0.3
1,402,695 - +0.8
1,402,697 - +0.4
1,402,699 - -0.3
1,402,699 - +0.1
1,402,712 - +1.8
1,402,720 - +0.7
1,402,720 - +1.5
1,402,738 + +1.0
1,402,747 - +0.3
1,402,828 + -0.7
1,402,863 - -0.4
1,402,873 + +0.3
1,402,876 + -0.4
1,402,879 - +0.1
1,402,888 - +0.3
1,402,913 - +0.2
1,403,025 + 12491 mRNA_4123 0.14 +0.5
1,403,044 + 12491 mRNA_4123 0.15 +1.1
1,403,163 - 12491 mRNA_4123 0.21 -0.8
1,403,797 - 12491 mRNA_4123 0.54 -0.2
1,404,188 - 12491 mRNA_4123 0.75 +1.5
1,404,666 - +1.0
1,404,809 + +0.2
1,405,098 + +0.6
1,405,111 - +0.6
1,405,243 + +0.4
1,405,276 + +1.5
1,405,578 - +0.0

Or see this region's nucleotide sequence