Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4144

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12511 and 12512 are separated by 199 nucleotides12512 and 12513 are separated by 504 nucleotides mRNA_4143: 12511 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,HMMPfam-Acetyltransferase (GNAT) domain-PF13444,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 1,456,221 to 1,457,720 12511 mRNA_4144: 12512 - K01669 phrB deoxyribodipyrimidine photo-lyase, at 1,457,920 to 1,460,424 12512 mRNA_4145: 12513 - K00641 metX homoserine O-acetyltransferase, at 1,460,929 to 1,462,648 12513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,456,989 + 12511 mRNA_4143 0.51 +0.8
1,457,478 - 12511 mRNA_4143 0.84 -0.0
1,457,554 - 12511 mRNA_4143 0.89 +0.5
1,457,841 + +0.7
1,458,158 - +0.6
1,458,358 - 12512 mRNA_4144 0.17 +0.6
1,458,613 + 12512 mRNA_4144 0.28 +0.7
1,458,748 + 12512 mRNA_4144 0.33 +0.1
1,459,005 - 12512 mRNA_4144 0.43 +0.0
1,459,026 + 12512 mRNA_4144 0.44 +1.2
1,459,071 + 12512 mRNA_4144 0.46 +1.1
1,459,174 - 12512 mRNA_4144 0.50 +0.5
1,459,220 + 12512 mRNA_4144 0.52 +1.3
1,459,327 + 12512 mRNA_4144 0.56 -0.1
1,459,789 + 12512 mRNA_4144 0.75 +1.3
1,459,896 + 12512 mRNA_4144 0.79 +1.2
1,460,073 + 12512 mRNA_4144 0.86 +1.5
1,460,368 + +0.8
1,460,371 + +0.3
1,460,494 + +0.5
1,460,509 - +1.2
1,460,521 + +0.5
1,460,643 + +0.7
1,460,645 - +0.8
1,460,650 + +0.1
1,460,666 + +1.4
1,460,681 + +0.8
1,460,681 + -0.3
1,460,681 + +0.2
1,460,819 + +0.8
1,460,820 + +0.8
1,460,985 + -1.1

Or see this region's nucleotide sequence