Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4156

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12523 and 12524 are separated by 161 nucleotides12524 and 12525 are separated by 236 nucleotides mRNA_4155: 12523 - K12492 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1, at 1,484,305 to 1,486,151 12523 mRNA_4156: 12524 - KOG1242 Protein containing adaptin N-terminal region, at 1,486,313 to 1,494,426 12524 mRNA_4157: 12525 - KOG2823 Cellular protein (glioma tumor suppressor candidate region gene 2), at 1,494,663 to 1,496,087 12525

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,485,518 - 12523 mRNA_4155 0.66 +0.9
1,485,735 + 12523 mRNA_4155 0.77 -0.3
1,486,134 + +0.4
1,486,184 + +0.7
1,486,313 - +1.0
1,486,321 - +0.1
1,486,878 - -0.8
1,487,999 - 12524 mRNA_4156 0.21 +0.2
1,489,368 + 12524 mRNA_4156 0.38 +0.8
1,489,495 + 12524 mRNA_4156 0.39 -0.9
1,494,399 - +0.7
1,494,437 - -0.1
1,494,467 - +0.6
1,494,559 + +1.6
1,494,580 - +0.6
1,494,605 - +0.2
1,494,610 + +0.6

Or see this region's nucleotide sequence