Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4214

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12581 and 12582 are separated by 457 nucleotides12582 and 12583 are separated by 704 nucleotides mRNA_4213: 12581 - K01673 cynT, can carbonic anhydrase, at 1,625,802 to 1,627,146 12581 mRNA_4214: 12582 - Hypothetical Protein, at 1,627,604 to 1,628,234 12582 mRNA_4215: 12583 - HMMPfam-RhoGAP domain-PF00620,ProSiteProfiles-Rho GTPase-activating proteins domain profile.-PS50238,SMART-Fes/CIP4 homology domain-SM00055,SMART-GTPase-activator protein for Rho-like GTPases-SM00324,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF48350, at 1,628,939 to 1,632,484 12583

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,627,163 - -0.3
1,627,164 - +1.4
1,627,237 + +0.8
1,627,269 + +0.4
1,627,276 + -0.0
1,627,346 - +0.6
1,627,377 + +0.3
1,627,403 + +0.5
1,627,405 - -0.0
1,627,410 - +0.4
1,627,410 - -0.1
1,627,418 + +0.7
1,627,431 - -0.4
1,627,433 + +0.3
1,627,435 + +0.8
1,627,437 + +0.3
1,627,437 + -0.4
1,627,593 - +0.1
1,627,659 - +0.1
1,627,735 + 12582 mRNA_4214 0.21 +0.5
1,627,740 + 12582 mRNA_4214 0.22 -0.0
1,627,742 - 12582 mRNA_4214 0.22 +1.1
1,628,166 + 12582 mRNA_4214 0.89 +0.1
1,628,450 - +0.4
1,628,592 - +0.3
1,628,705 - -1.1
1,628,870 - -0.5
1,628,898 + +0.7
1,628,898 + +1.4
1,628,899 - +0.5
1,629,051 + -0.3

Or see this region's nucleotide sequence