Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4218

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12585 and 12586 are separated by 517 nucleotides12586 and 12587 are separated by 124 nucleotides mRNA_4217: 12585 - K14830 MAK11, PAK1IP1 protein MAK11, at 1,636,236 to 1,637,979 12585 mRNA_4218: 12586 - K17491 SMEK, PPP4R3 protein phosphatase 4 regulatory subunit 3, at 1,638,497 to 1,642,867 12586 mRNA_4219: 12587 - HMMPfam-Protein phosphatase inhibitor 2 (IPP-2)-PF04979, at 1,642,992 to 1,644,310 12587

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,638,017 - -0.3
1,638,026 - +0.6
1,638,028 + -0.5
1,638,036 + +1.4
1,638,049 + -1.0
1,638,456 - -0.1
1,638,512 + +0.1
1,638,529 + -1.3
1,638,591 - +0.2
1,638,727 - -1.7
1,638,766 - +0.7
1,638,874 + +1.4
1,638,874 - +0.3
1,639,020 - 12586 mRNA_4218 0.12 +0.6
1,639,038 - 12586 mRNA_4218 0.12 +0.2
1,639,455 - 12586 mRNA_4218 0.22 +0.6
1,639,777 - 12586 mRNA_4218 0.29 -0.1
1,639,787 + 12586 mRNA_4218 0.30 +0.4
1,639,887 - 12586 mRNA_4218 0.32 -0.0
1,639,993 + 12586 mRNA_4218 0.34 -1.2
1,640,227 + 12586 mRNA_4218 0.40 +0.4
1,640,632 - 12586 mRNA_4218 0.49 +1.8
1,640,636 - 12586 mRNA_4218 0.49 -0.4
1,640,825 + 12586 mRNA_4218 0.53 +0.9
1,641,100 + 12586 mRNA_4218 0.60 +0.5
1,641,366 + 12586 mRNA_4218 0.66 +1.2
1,641,493 - 12586 mRNA_4218 0.69 +1.4
1,641,545 - 12586 mRNA_4218 0.70 +0.3
1,641,650 + 12586 mRNA_4218 0.72 +1.0
1,641,732 + 12586 mRNA_4218 0.74 +0.2
1,642,055 + 12586 mRNA_4218 0.81 +1.0
1,642,274 + 12586 mRNA_4218 0.86 +0.2
1,642,378 - 12586 mRNA_4218 0.89 +0.6
1,642,475 - +1.4
1,642,511 + +0.8
1,642,636 - +0.4
1,642,652 + +0.4
1,642,798 + +0.0
1,642,798 - +1.6
1,642,798 - -1.1
1,642,799 - +1.3
1,642,802 + +0.6
1,642,807 - +0.1
1,642,812 + -0.3
1,642,918 - +0.1
1,642,925 + -0.0
1,642,933 - +0.8
1,642,935 + +0.9
1,642,937 + -0.2
1,642,938 + +0.2
1,642,941 + +0.6
1,642,945 - -1.4
1,642,953 + +0.3
1,643,066 + +1.0
1,643,095 + +1.9
1,643,522 + 12587 mRNA_4219 0.40 +0.3
1,643,536 - 12587 mRNA_4219 0.41 +0.0
1,643,538 - 12587 mRNA_4219 0.41 +1.0
1,643,569 - 12587 mRNA_4219 0.44 +0.9
1,643,662 - 12587 mRNA_4219 0.51 -0.6
1,643,822 - 12587 mRNA_4219 0.63 +0.9

Or see this region's nucleotide sequence