Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4238

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12605 and 12606 are separated by 553 nucleotides12606 and 12607 are separated by 346 nucleotides mRNA_4237: 12605 - K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1, at 1,687,514 to 1,688,995 12605 mRNA_4238: 12606 - KOG1105 Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1, at 1,689,549 to 1,691,062 12606 mRNA_4239: 12607 - Hypothetical Protein, at 1,691,409 to 1,692,539 12607

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,688,721 + 12605 mRNA_4237 0.81 +1.2
1,689,026 + +0.6
1,689,349 + -0.3
1,689,761 + 12606 mRNA_4238 0.14 +0.2
1,690,030 + 12606 mRNA_4238 0.32 -0.1
1,690,030 + 12606 mRNA_4238 0.32 +0.1
1,690,068 - 12606 mRNA_4238 0.34 +0.6
1,690,084 - 12606 mRNA_4238 0.35 +1.2
1,690,531 - 12606 mRNA_4238 0.65 -0.1
1,691,154 + +0.5
1,691,556 - 12607 mRNA_4239 0.13 -0.8
1,691,721 + 12607 mRNA_4239 0.28 -0.1
1,691,795 - 12607 mRNA_4239 0.34 -0.4
1,691,895 + 12607 mRNA_4239 0.43 +0.8
1,692,026 - 12607 mRNA_4239 0.55 -0.5
1,692,027 + 12607 mRNA_4239 0.55 +0.6
1,692,031 - 12607 mRNA_4239 0.55 +0.2

Or see this region's nucleotide sequence