Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4262

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12629 and 12630 are separated by 165 nucleotides12630 and 12631 are separated by 164 nucleotides mRNA_4261: 12629 - HMMPfam-NUDIX domain-PF00293,ProSitePatterns-Nudix box signature.-PS00893,ProSiteProfiles-Nudix hydrolase domain profile.-PS51462,SUPERFAMILY--SSF55811, at 1,737,818 to 1,738,734 12629 mRNA_4262: 12630 - KOG2688 Transcription-associated recombination protein - Thp1p, at 1,738,900 to 1,741,067 12630 mRNA_4263: 12631 - K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic, at 1,741,232 to 1,743,677 12631

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,738,088 - 12629 mRNA_4261 0.29 +0.9
1,738,411 + 12629 mRNA_4261 0.65 +1.0
1,738,584 + 12629 mRNA_4261 0.84 +0.2
1,738,666 - +0.7
1,738,686 + +0.2
1,738,720 - +0.0
1,738,805 + +0.6
1,738,821 - +0.6
1,738,828 + -0.0
1,738,994 - +1.4
1,738,995 + -0.8
1,738,995 - -0.1
1,739,241 + 12630 mRNA_4262 0.16 +2.9
1,739,830 - 12630 mRNA_4262 0.43 +0.3
1,740,131 + 12630 mRNA_4262 0.57 -0.3
1,740,822 - 12630 mRNA_4262 0.89 -0.8

Or see this region's nucleotide sequence