Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4286

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12653 and 12654 are separated by 92 nucleotides12654 and 12655 are separated by 184 nucleotides mRNA_4285: 12653 - K18162 NDUFAF5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5, at 1,803,577 to 1,805,345 12653 mRNA_4286: 12654 - K01288 KEX1 carboxypeptidase D, at 1,805,438 to 1,808,326 12654 mRNA_4287: 12655 - K14559 MPP10 U3 small nucleolar RNA-associated protein MPP10, at 1,808,511 to 1,811,471 12655

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,805,440 - +0.1
1,805,694 + +0.9
1,805,710 - +0.4
1,805,713 + +0.1
1,805,980 + 12654 mRNA_4286 0.19 +1.0
1,806,529 + 12654 mRNA_4286 0.38 +0.5
1,806,784 + 12654 mRNA_4286 0.47 +0.6
1,806,850 + 12654 mRNA_4286 0.49 -0.4
1,806,972 + 12654 mRNA_4286 0.53 -0.4
1,807,117 + 12654 mRNA_4286 0.58 +0.6
1,807,347 + 12654 mRNA_4286 0.66 -0.8
1,807,351 - 12654 mRNA_4286 0.66 +0.9
1,807,711 - 12654 mRNA_4286 0.79 +0.9
1,808,050 + +0.2
1,808,274 - +0.1
1,808,274 + +0.3
1,808,282 - +1.5
1,808,289 - +0.9
1,808,299 + +0.2
1,808,303 - -0.5
1,808,318 + +0.4
1,808,326 - +0.1
1,808,436 - -0.3
1,808,436 + -0.1
1,808,438 - +1.1
1,808,445 + +0.0
1,808,447 - +0.8
1,808,455 - +0.2
1,808,457 + +1.1
1,808,602 - +1.1

Or see this region's nucleotide sequence